Combined burden and functional impact tests for cancer driver discovery using DriverPower

- Shuai, Shimin, Abascal, Federico, Carlevaro-Fita, Joana, Chakravarty, Dimple, Chan, Calvin Wing Yiu, Chen, Ken, Choi, Jung Kyoon, Deu-Pons, Jordi, Dhingra, Priyanka, Diamanti, Klev, Feuerbach, Lars, Fink, J. Lynn, Amin, Samirkumar B., Scarlett, Christopher J., Frigola, J, Gambacorti-Passerini, C, Garsed, DW, Getz, G, Guo, Q, Gut, IG, Bader, Gary D., Bandopadhayay, Pratiti, Beroukhim, Rameen, Bertl, Johanna, Boroevich, Keith A., Brunak, Søren, Campbell, Peter J.

Genomic footprints of activated telomere maintenance mechanisms in cancer

- Sieverling, Lina, Hong, Chen, Park, Peter J., Eils, Roland, Schlesner, Matthias, Akdemir, Kadir C., Alvarez, Eva G., Baez-Ortega, Adrian, Beroukhim, Rameen, Boutros, Paul C., Bowtell, David D. L., Brors, Benedikt, Koser, Sandra D., Burns, KH, Campbell, PJ, Chan, K, Chen, K, Dueso-Barroso, A, Dunford, AJ, Edwards, PA, Estivill, X, Etemadmoghadam, D, Feuerbach, L, Ginsbach, Philip, Fink, JL, Frenkel-Morgenstern, M, Garsed, DW, Gerstein, M, Gordenin, DA, Haan, D, Haber, JE, Hess, JM, Imielinski, M, Jones, DTW, Kleinheinz, Kortine, Ju, YS, Kazanov, MD, Klimczak, LJ, Koh, Y, Korbel, JO, Kumar, K, Lee, EA, Lee, JJK, Li, Y, Lynch, AG, Hutter, Barbara, Macintyre, G, Markowetz, F, Martincorena, I, Martinez-Fundichely, A, Meyerson, M, Miyano, S, Nakagawa, H, Navarro, FCP, Ossowski, S, Pearson, JV, Braun, Delia M., Puiggròs, M, Rippe, K, Roberts, ND, Roberts, SA, Rodriguez-Martin, B, Schumacher, SE, Scully, R, Shackleton, M, Sidiropoulos, N, Stewart, C, Cortés-Ciriano, Isidro, Torrents, D, Tubio, JMC, Villasante, I, Waddell, N, Wala, JA, Weischenfeldt, J, Yang, L, Yao, X, Yoon, SS, Zamora, J, Xi, Ruibin, Zhang, CZ, Aaltonen, LA, Abascal, F, Abeshouse, A, Aburatani, H, Adams, DJ, Agrawal, N, Ahn, KS, Ahn, SM, Aikata, H, Kabbe, Rolf, Akbani, R, Akdemir, KC, Al-Ahmadie, H, Scarlett, Christopher J.

Inferring structural variant cancer cell fraction

- Cmero, Marek, Yuan, Ke, Cao, Shaolong, Scarlett, Christopher J., Christie, Elizabeth L., Cun, Yupeng, Dawson, Kevin J., Demeulemeester, Jonas, Dentro, Stefan C., Deshwar, Amit G., Donmez, Nilgun, Drews, Ruben M., Eils, Roland, Ong, Cheng Soon, Fan, Y, Fittall, MW, Garsed, DW, Gerstung, M, Getz, G, Gonzalez, S, Ha, G, Haase, K, Imielinski, M, Jerman, L, Schröder, Jan, Ji, Y, Jolly, C, Kleinheinz, K, Lee, J, Lee-Six, H, Leshchiner, I, Livitz, D, Malikic, S, Martincorena, I, Mitchell, TJ, Adams, David J., Morris, QD, Mustonen, V, Oesper, L, Peifer, M, Peto, M, Raphael, BJ, Rosebrock, D, Rubanova, Y, Sahinalp, SC, Salcedo, A, Anur, Pavana, Schlesner, M, Schumacher, SE, Sengupta, S, Shi, R, Shin, SJ, Spellman, PT, Spiro, O, Stein, LD, Tarabichi, M, Van Loo, P, Beroukhim, Rameen, Vembu, S, Vázquez-García, I, Wang, W, Wedge, DC, Wheeler, DA, Wintersinger, JA, Yang, TP, Yao, X, Yu, K, Zhu, H, Boutros, Paul C., Corcoran, NM, Papenfuss, T, Hovens, CM, Markowetz, F, Macintyre, G, Aaltonen, LA, Abascal, F, Abeshouse, A, Aburatani, H, Adams, DJ, Bowtell, David D. L., Agrawal, N, Ahn, KS, Ahn, SM, Aikata, H, Akbani, R, Akdemir, KC, Al-Ahmadie, H, Al-Sedairy, ST, Al-Shahrour, F, Alawi, M, Campbell, Peter J., Albert, M, Aldape, K, Alexandrov, LB, Ally, A, Alsop, K, Alvarez, EG, Amary, F, Amin, SB, Aminou, B, Ammerpohl, O

Integrative pathway enrichment analysis of multivariate omics data

- Paczkowska, Marta, Barenboim, Jonathan, Bader, Gary D., Beroukhim, Rameen, Bertl, Johanna, Boroevich, Keith A., Brunak, Søren, Campbell, Peter J., Carlevaro-Fita, Joana, Chakravarty, Dimple, Chan, Calvin Wing Yiu, Chen, Ken, Sintupisut, Nardnisa, Choi, Jung Kyoon, Scarlett, Christopher J., Fox, Natalie S., Zhu, Helen, Abd-Rabbo, Diala, Mee, Miles W., Boutros, Paul C., Abascal, Federico, Armin, Samirkumar B.